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Coral Reef Research Projects:
- Ecology of reef fishes on natural banks in the NW Gulf of Mexico
- EFH and population connectivity of fishes in the Caribbean
- Fish assemblages on artificial and natural reefs in the Flower Garden Banks NMS
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GOM natural banks project
Click on photos to enlarge |

Artificial settlement structures at
Sonnier Bank |

Rockhind grouper |

Hawkfish in Millepora and sponge
habitat |

Future marine biologist (Alex
Rooker) preparing artificial
settlement habitats for
deployment |

Aboard Zodiac (from Holo-Kai) to
Sonnier Bank |
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Flower Garden Banks project
Click on photos to enlarge |

Diver on crest of Flower Garden Banks |

Grouper on East Flower Garden Banks |

Reef fish diversity on East Flower
Garden Banks NMS |

Junior scientist (Garrett Rooker) with PI |
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1. Ecology of reef fishes on natural banks in the NW
Gulf of Mexico |
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Compared to low-relief soft-sediment environments that dominate the
continental shelf of the northwestern Gulf of Mexico, hard banks support
diverse fish and coral communities that represent important naturally
occurring aggregation areas for exploited populations. Most of these
banks are unmonitored and their importance to critical life stages of
fish resources has not been quantified. The goal of this project is to
evaluate the importance of these banks as habitat for corals and fish
populations. As part of this project, we have completed an extensive
side scan sonar surveys of Sonnier and McGrail Banks in order to
characterize and map habitats. In addition, SCUBA and ROV surveys of the
benthos and fish communities at Sonnier Bank were conducted. Results to
date indicate the presence and abundance of important fishery resources
of snappers and groupers. On both banks, a broad size range and
diversity of groupers were observed, and our observations suggest that
Sonnier Bank may function as a nursery for scamp, yellowmouth, and
Warsaw grouper, and specific areas of each bank may represent spawning
sites for scamp and yellowmouth groupers. Sonnier Bank was clearly a
more important habitat for snappers than McGrail Bank. In addition,
previous analysis of otolith microstructure on a limited number of
samples, suggested that age-structure for snappers and groupers at
Sonnier Bank are more diverse than what has been reported for other
areas in the Gulf and northwestern Atlantic, and samples collected in
2005 have helped to better define the age structure of snapper at
Sonnier Bank. Finally, we employed photographic methods to characterize
benthic habitats with SCUBA, and computerized image analysis was used to
quantify coverage of benthic organisms. This has allowed us to
non-destructively quantify and characterize the benthic habitats at the
two main peaks of Sonnier Bank. This baseline information has become
immediately important due to the potentially catastrophic effects of
Hurricane Rita, which passed almost directly across Sonnier Bank as a
category-4 hurricane. In response, we will be able to replicate this
survey in 2006 and quantify the disturbances caused by this event in
terms of the composition, diversity and abundances in both the benthic
and fish communities. Finally, in this effort we have confirmed the
presence of a non-native coral species at Sonnier Bank. This species is
the orange-cup coral (Tubastrea coccinea), which has recently invaded
the Gulf of Mexico and presents a conservation concern because it may
displace native species.
Below: Bathymetry of Sonnier Bank and McGrail Bank. Detail of areas that were surveyed with SCUBA and
ROV are presented as inset side scan sonar images that are labeled alphabetically.

click image to enlarge

click image to enlarge
Below: SCUBA point count data from surveys of Sonnier Bank in summers of 2004 and 2005.
The mean depth trends (and 95% confidence intervals, dotted lines) were estimated with analysis of covariance modeling a Poisson response distribution.

click image to enlarge
Below: Dominant benthic species at Sonnier Bank: mixed algae (blue), touch-me-not sponge (white), fire coral (orange), black ball sponge (yellow),
and orange elephant ear sponge (green).
Mean % coverage is shown in the upper panel and mean fragment size in the lower panel. The % coverage is based upon our quadrat size of 0.25 m2.

click image to enlarge
Further Reading:
Kraus RT, Friess C, Hill RL, and Rooker JR (2007) Characteristics of the
Snapper-Grouper-Grunt Complex, Benthic Habitat Description, and Patterns
of Reef Fish Recruitment at Sonnier Bank in the Northwestern Gulf of
Mexico. Proceedings of the Gulf and Caribbean Fisheries Institute,
59:183-189
Kraus RT., Rooker JR, Hill RL, and Dellapenna T (2006) Preliminary
characterization of a mid-shelf bank in the northwestern Gulf of Mexico
as essential habitat of reef fishes. Proceedings of the Gulf and
Caribbean Fisheries Institute 57:621-632
Rooker JR, Dokken QR, Pattengill CV, Holt GJ (1997) Fish assemblages on
artificial and natural reefs in the Flower Garden Banks National Marine
Sanctuary, U.S.A. Coral Reefs 16: 83-92
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2. EFH and population connectivity of fishes in the
Caribbean |
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Many exploited fish species (snappers, grunts, and groupers) settle
in near-shore nursery grounds such as seagrass beds or among mangrove
prop roots. It is presumed that these habitats provide shelter and food
as well as a reduced predation pressure than areas on the coral reef.
Coastal development leading to the fragmentation or complete removal of
nursery habitats could have a negative impact on adult populations and
their associated fisheries. Studies have shown that Caribbean embayments
that have seagrass beds and mangroves have a higher density of juvenile
fishes and that the presence of adjacent nursery-type habitat
significantly increases the number of adults on the reef. Ontogenetic
connectivity between biotopes has been inferred by examining spatial and
temporal patterns in size distributions between juvenile and adult
habitat. Tagging studies have demonstrated connectivity between
back-reef habitats on a small spatial scale; however large scale
mark-recapture methods are necessary to determine whether juveniles of a
species move successfully from putative nursery habitats to adult
habitats. Presently, evidence supporting successful movement is largely
indirect and the causal agent for this movement has been only briefly
addressed (ontogenetic diet shift, morphology changes). We are currently
using a suite of natural tracers (stable isotopes in tissue,
isotopes/trace elements in otoliths) and tags (coded wire, acoustic) to
examine direct and indirect linkages amoung juvenile and asult habitats.
In addition, the site- and habitat-specific demographic (size-, age-,
sex-based) and biological (growth, reproductive histology) data of
exploited species are being collected.
Further Reading
Rooker JR, Secor DH (eds.) (2005) Connectivity in the life cycles of
fishes and invertebrates that use estuaries. Estuarine, Coastal and
Shelf Science 64: 1-148
Rooker JR, Dennis GD (1991) Diel, lunar, and seasonal changes in a
mangrove fish assemblage off southwestern Puerto Rico. Bulletin of
Marine Science 49: 684-698
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3. Fish assemblages on artificial and natural reefs in the
Flower Garden Banks NMS |
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In addition to natural coral reef and hard bank habitats, the abundant
onshore petroleum production platforms in the Gulf (ca. 3800) serve as
habitat for reef fish assemblages. These structures provide hard
substrata which may increase the supply of prey, shelter, and settlement
habitat for recruits. Apart from generalized biological descriptions,
very little is understood about these artificial reef habitats,
particularly with regard to the ecological role of onshore platforms.
Production platforms located near the continental shelf margin of the
Gulf of Mexico provide a unique opportunity to expand marine research on
tropical fishes associated with offshore artificial and natural
habitats. Of particular value is Mobil Production Platform High Island
(HI) A-389A which is located within the boundaries of the Flower Garden
Banks National Marine Sanctuary (FGBNMS). The sanctuary encompasses the
northernmost thriving tropical coral reefs on the continental shelf of
North America. As a result, fish assemblages located in this area are
unique, combining tropical reef-dependent and offshore pelagic fish
species. The purpose of this research was to determine spatial and temporal
patterns in habitat utilization by juvenile (0-age recruits) and adult
fishes occupying an offshore production platform. Emphasis was placed on
determining vertical distribution, diel periodicity, and seasonal
variation in abundance of reef inhabitants. Microhabitat selection was
also investigated. Quantitative surveys from the East and West Flower
Garden Banks (EFG and WFG) were conducted for comparisons of natural and
artificial reef fish assemblages.
Visual censusing was used to characterize fish assemblages on artificial
and natural reefs located within the boundaries of the Flower Garden
Banks National Marine Sanctuary (FGBNMS) in the northwestern Gulf of
Mexico. Emphasis was placed on determining spatial and temporal patterns
in habitat utilization by fishes on an offshore artificial reef (Mobil
Platform HI-A389A). Overall, 43 species were observed during diurnal
surveys in the upper 24 m of the artificial reef. Midwater pelagic
fishes (i.e., carangids and scombrids) accounted for over 50% of all
taxa enumerated on the artificial reef; however, these taxa were
transient members of the assemblage and were observed infrequently.
Labrids, pomacentrids, and serranids were the dominant reef-dependent
taxa. Distinct trends in vertical, diel, and seasonal abundances were
observed for juvenile and adult fishes. Of the three designated depth
zones (upper 1.5-9.0, middle 9.0-16.5; lower 16.5-24.0rm), abundance and
species diversity were lowest in the upper zone. Nocturnal counts were
characterized by a marked reduction or complete absence of most species,
due in part to twilight cover-seeking and movement activities. Seasonal
variation in community composition and species abundance (May versus
September) was primarily due to recruitment of juveniles (0-age fishes)
to the artificial reef in late summer. Increases in total fish abundance
(all taxa combined) coincided with both increasing habitat rugosity and
degree of fouling. Species richness on natural coral reefs in the FGBNMS
was higher than on the artificial reef. Unlike the artificial reef, fish
assemblages on the natural reefs were dominated by a single family (Pomacentridae)
which accounted for over 50% of all individuals observed.

click image to enlarge
Further Reading
Rooker JR, Dokken QR, Pattengill CV, Holt GJ (1997) Fish assemblages on
artificial and natural reefs in the Flower Garden Banks National Marine
Sanctuary, U.S.A. Coral Reefs 16: 83-92
back to top
Dr. Jay R. Rooker · Department of Marine Biology
Texas A&M University @ Galveston
5007 Ave U, Galveston, Texas 77551
rookerj@tamug.edu · 409-740-4744
Site by Third Coast
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